microsoft/bioconductor-bioconductor-docker repository overview

⁠Using Bioconductor images on Azure

⁠Featured Tags

• latest docker pull mcr.microsoft.com/bioconductor/bioconductor_docker:latest

⁠About bioconductor

Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, and an active user community. We're now offering a mirror of the official Bioconductor docker image on Microsoft Container Registry. This image can also be used as a base for your own custom genomics related docker images.

Useful links for Bioconductor

1. Bioconductor webpage⁠

2. Official Bioconductor docker image⁠

3. For more information about Bioconductor and docker images⁠

⁠Related Repos

• Official Bioconductor docker image⁠

⁠How to Use this Image

Official Bioconductor docker image mirrored on Microsoft Container Registry

Pull the 'bioconductor_docker' image from Microsoft Container Registry

docker pull mcr.microsoft.com/bioconductor/bioconductor_docker:latest

Sample: Run RStudio interactively from your docker container

To run RStudio in a web browser session, run the following and access it from 127.0.0.1:8787. The default user name is "rstudio" and you can specify your password as the example below (here, it is set to 'bioc'):

docker run --name bioconductor_docker_rstudio \
      -v ~/host-site-library:/usr/local/lib/R/host-site-library \
      -e PASSWORD='bioc'                               \
      -p 8787:8787                                     \
      mcr.microsoft.com/bioconductor/bioconductor_docker:latest

To run RStudio on your terminal:

docker run --name bioconductor_docker_rstudio \
      -it                                            \
      -v ~/host-site-library:/usr/local/lib/R/host-site-library \
      -e PASSWORD='bioc'                               \
      -p 8787:8787                                     \
      mcr.microsoft.com/bioconductor/bioconductor_docker:latest R 

⁠Full Tag Listing

⁠Linux Images

You can retrieve a list of all available tags for bioconductor/bioconductor_docker at https://mcr.microsoft.com/v2/bioconductor/bioconductor_docker/tags/list⁠

⁠Support and feedback

If you have any problems with or questions about this image OR to provide feedback, please contact us through an e-mail⁠.

⁠License

Microsoft is mirroring the official Bioconductor docker image for Azure users. You can find the licensing details from Official Bioconductor Package Guidelines⁠