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broadinstitute/dig-loam:saige

Manifest digest

sha256:7f73448d876f04a8c02ce4063fc42cee628ea830e0e2ce8a1df3f6e05341eec4

OS/ARCH

linux/amd64

Compressed size

884.47 MB

Last pushed

over 3 years by ryankbroad

Type

Image

Manifest digest

sha256:7f73448d876f04a8c02ce4063fc42cee628ea830e0e2ce8a1df3f6e05341eec4

Image Layers

1ADD file ... in / 42.1 MB
2/bin/sh -c rm -rf /var/lib/apt/lists/*529 B
3/bin/sh -c set -xe &&849 B
4/bin/sh -c mkdir -p /run/systemd170 B
5CMD ["/bin/bash"]0 B
6LABEL maintainer=wzhou@broadinstitute.org0 B
7ENV LC_ALL=C.UTF-80 B
8ENV LANG=C.UTF-80 B
9/bin/sh -c apt-get update &&375.17 MB
10/bin/sh -c apt-get install python3-pip51.45 MB
11/bin/sh -c apt install wget784.26 KB
12/bin/sh -c apt-get update4.74 MB
13/bin/sh -c apt-get install -y2.27 MB
14ADD file ... in /usr/local/bin/ 495 B
15/bin/sh -c Rscript /usr/local/bin/install_packages.R63.57 MB
16/bin/sh -c Rscript -e 'devtools::install_github("leeshawn/SKAT")'1.88 MB
17/bin/sh -c echo "update 0.370 B
18/bin/sh -c Rscript -e 'devtools::install_github("leeshawn/SPAtest")'114.82 KB
19/bin/sh -c echo "update 0.43.20 B
20/bin/sh -c Rscript -e 'devtools::install_github("leeshawn/MetaSKAT")'329.84 KB
21/bin/sh -c echo "update 0.44.2"0 B
22/bin/sh -c export MKL_NUM_THREADS=10 B
23/bin/sh -c export MKL_DYNAMIC=false0 B
24/bin/sh -c export OMP_NUM_THREADS=10 B
25/bin/sh -c export OMP_DYNAMIC=false0 B
26/bin/sh -c apt-get update7.74 MB
27/bin/sh -c apt-get install -y13.74 MB
28/bin/sh -c echo "hello world13"0 B
29ADD file ... in /usr/local/bin/ 425 B
30/bin/sh -c Rscript /usr/local/bin/install_packages_2.R18.98 MB
31ENV SRC_BRANCH=master0 B
32ENV REPO_SRC_URL=https://github.com/weizhouUMICH/SAIGE0 B
33/bin/sh -c echo "hello world13"0 B
34/bin/sh -c rm -rf SAIGE0 B
35/bin/sh -c echo "hello world562"0 B
36/bin/sh -c git clone --depth276.3 MB
37/bin/sh -c R CMD INSTALL25.3 MB
38/bin/sh -c Rscript SAIGE/extdata/step1_fitNULLGLMM.R --help92 B
39/bin/sh -c echo "hello world56"0 B
40/bin/sh -c Rscript SAIGE/extdata/step2_SPAtests.R --help92 B
41/bin/sh -c echo "hello world5"0 B
42/bin/sh -c mv SAIGE/extdata/step1_fitNULLGLMM.R SAIGE/extdata/step2_SPAtests.R7.3 KB
43/bin/sh -c chmod a+x /usr/local/bin/step1_fitNULLGLMM.R3.4 KB
44/bin/sh -c chmod a+x /usr/local/bin/step2_SPAtests.R4.57 KB
45/bin/sh -c chmod a+x /usr/local/bin/createSparseGRM.R1.01 KB
46/bin/sh -c createSparseGRM.R --help92 B
47/bin/sh -c step1_fitNULLGLMM.R --help92 B
48/bin/sh -c step2_SPAtests.R --help92 B

Command

ADD file:9511990749b593a6f98fcc4d7dfe03df7b2c79be69f7a9ea96b52a6a8065829d in /