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broadinstitute/gatk:4.6.0.0

Manifest digest

sha256:29721056dd3ba120bfd19e1fe9766f64600e5f8a2802b11755066496a1d0a31b

OS/ARCH

linux/amd64

Compressed size

2.34 GB

Last pushed

8 months by droazen

Type

Image

Manifest digest

sha256:29721056dd3ba120bfd19e1fe9766f64600e5f8a2802b11755066496a1d0a31b

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.18 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8/bin/sh -c apt update &&363.22 MB
9/bin/sh -c java -version131 B
10/bin/sh -c echo "deb [signed-by=/usr/share/keyrings/cloud.google.gpg]49.34 MB
11ENV HOME=/root0 B
12WORKDIR /root0 B
13CMD ["bash"]0 B
14ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
15ENV DOWNLOAD_DIR=/downloads0 B
16ENV CONDA_URL=https://repo.anaconda.com/miniconda/Miniconda3-py310_23.10.0-1-Linux-x86_64.sh0 B
17ENV CONDA_SHA256=c7a34df472feb69805b64df6e8db58363c5ccab41cd3b40b07e3e6dfb924359a0 B
18ENV CONDA_PATH=/opt/miniconda0 B
19ENV PATH=/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20/bin/sh -c mkdir $DOWNLOAD_DIR &&123.27 MB
21/bin/sh -c rm /etc/apt/sources.list.d/google-cloud-sdk.list &&457 B
22WORKDIR /gatk127 B
23/bin/sh -c chmod -R a+rw93 B
24COPY dir:cb31d7cb3772a2f00958b4558aa2dbe429f95e936810efecb0249329d8a4413d in . 713.19 MB
25/bin/sh -c ln -s $(189 B
26WORKDIR /root0 B
27/bin/sh -c java -jar gatk.jar274 B
28WORKDIR /gatk0 B
29ENV CI=true0 B
30/bin/sh -c echo "source activate556 B
31/bin/sh -c cp -r /root/run_unit_tests.sh582 B
32ENV CLASSPATH=/gatk/gatk.jar: PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
33/bin/sh -c conda env create1.09 GB
34CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
35ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

 ARG RELEASE