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ncbi/rapt:v0.5.0

Manifest digest

sha256:74bbd7d62b65a68359005a8cd38c948ea0966fadad2a4bcee176e6113ce9a5d3

OS/ARCH

linux/amd64

Compressed size

3.48 GB

Last pushed

about 3 years by pmeric

Type

Image

Manifest digest

sha256:74bbd7d62b65a68359005a8cd38c948ea0966fadad2a4bcee176e6113ce9a5d3

Image Layers

1ADD file ... in / 72.57 MB
2LABEL org.label-schema.schema-version=1.0 org.label-schema.name=CentOS Base0 B
3CMD ["/bin/bash"]0 B
4ARG version0 B
5ARG bindir0 B
6ARG libdir0 B
7ARG trnascan_version0 B
8ARG ncbi_crisper_version0 B
9USER root0 B
10WORKDIR /root0 B
11COPY --chown=root:rootdir:8e7d04b988c54c0db41d5bfaa5a828be2dd546d043d1a28f2d7f0d997c29d856 in /etc 1.01 KB
12|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7759 B
13|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7321.64 MB
14|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.710.93 MB
15|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7103.11 MB
16|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7182.44 MB
17|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.71.3 KB
18ENV PGAP_VERSION=2021-11-29.build57420 B
19ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system0 B
20|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7256 B
21COPY file:aeb6727cb3ff81a24840e275d624d2d92025995375afe628c530fa6da984fb9b in /root 55.03 MB
22WORKDIR /root0 B
23COPY dir:b6433d68834a949ffe38760d1b99c6f0e8ab15875bff3353cbfca6476ed399b3 in /root/binaries 1.2 GB
24|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.755.03 MB
25WORKDIR /root/binaries0 B
26|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7851.55 MB
27|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.737.01 MB
28|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7262 B
29|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7323 B
30WORKDIR /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin0 B
31|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7143.75 MB
32WORKDIR /root0 B
33|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.72.28 KB
34ENV NCBI=/netopt/ncbi_tools640 B
35ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system0 B
36ENV PATH=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
37ENV NI_SERVICE_NAME_TAXONOMY=some bogus value0 B
38ENV NI_SERVICE_NAME_TAXONOMY3=some bogus value0 B
39COPY dir:6e7d36b798e46752047a440345108ec8093d490ed1dcbe26f8d7a0db6c8e3af6 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin 111.19 MB
40COPY file:196badb475cb8d8d075c4d5c7f92fa6d88b73f4dfc241d5f46e6660815fa7726 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/ 320 B
41COPY multi:e0b9cd7e2dd52eede56dcb977fc26caa7d19bec2476321c8a2670f692571ed7f in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/bin/ 111.19 MB
42COPY multi:c129b80ff25c7de8f8d0b22d56ab7d70c10574aa4c14001f697c39c0eb866581 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin/ 8.25 KB
43COPY multi:f8150279596baa1727b51d7a208165254e1726b7b8d05490f850c7be5892a419 in /lib64/ 6.24 MB
44COPY file:3969a3de030a1e912e8aa87e0f0577e99e8a49b63a53aaa467d5a0358cba7287 in /netopt/ncbi_tools64/.ncbirc 630 B
45|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7131 B
46WORKDIR /home/gpipe0 B
47CMD ["/usr/bin/bash"]0 B
48USER root0 B
49COPY dir:52e011bf10fcc6da5528c2a92167ab926c389a9b7bd2cbc2f6ad16fa1876e131 in /pgap/pgap 36.58 MB
50WORKDIR /pgap0 B
51/bin/sh -c /opt/python-3.9/bin/python3.9 -m venv3.77 MB
52/bin/sh -c venv/bin/pip3 install -U1.36 MB
53/bin/sh -c venv/bin/pip3 install -U63.38 MB
54/bin/sh -c venv/bin/pip3 install -U4.64 KB
55ENV PATH=/pgap/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
56/bin/sh -c mkdir /pgap/input148 B
57CMD ["/bin/sh"]0 B
58ARG PGAPX_BUILD0 B
59ARG PGAPX_REFDATA_BUCKET0 B
60ARG RAPT_BUILD0 B
61ENV PYTHONUNBUFFERED=10 B
62ENV NCBI=/netopt/ncbi_tools640 B
63ENV PATH=/pgap/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2021-11-29.build5742/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/skesa:/usr/bin/vdb0 B
64ENV LD_LIBRARY_PATH=:/usr/lib/ngs:/usr/lib/vdb0 B
65COPY dir:a59aac70937cde7dfdcf73022d4be1f9d95e053358bcdd1ed1c8091ba680f28f in / 162.65 MB
66ENV PGAPX_BUILD=2021-11-29.build57420 B
67ENV RAPT_BUILD=rapt-362554260 B
68ENV PGAPX_REFDATA_BUCKET=ncbi-pgap-refdata0 B
69ENV TINI_VERSION=v0.19.00 B
70ADD 84b50f1acc38c999c313832de2ae4bbedb1f1fa3ab9c76209b6f0adee5230fd1 in /tini 9.24 KB
71/bin/sh -c chmod +x /tini9.24 KB
72ENTRYPOINT ["/tini" "--"]0 B
73CMD ["/app/execute"]0 B

Command

ADD file:b3ebbe8bd304723d43b7b44a6d990cd657b63d93d6a2a9293983a30bfc1dfa53 in /