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ncbi/rapt:v0.5.1

Manifest digest

sha256:8c3657ba414da09fd98f424e870bfa26748219a3392c9d0bbd7d54e74c4cdb5e

OS/ARCH

linux/amd64

Compressed size

3.55 GB

Last pushed

almost 3 years by pmeric

Type

Image

Manifest digest

sha256:8c3657ba414da09fd98f424e870bfa26748219a3392c9d0bbd7d54e74c4cdb5e

Image Layers

1ADD file ... in / 72.57 MB
2LABEL org.label-schema.schema-version=1.0 org.label-schema.name=CentOS Base0 B
3CMD ["/bin/bash"]0 B
4ARG version0 B
5ARG bindir0 B
6ARG libdir0 B
7ARG trnascan_version0 B
8ARG ncbi_crisper_version0 B
9USER root0 B
10WORKDIR /root0 B
11COPY --chown=root:rootdir:8e7d04b988c54c0db41d5bfaa5a828be2dd546d043d1a28f2d7f0d997c29d856 in /etc 1.01 KB
12|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7760 B
13|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7327.04 MB
14|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.710.94 MB
15|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7107.07 MB
16|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7186.41 MB
17|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.71.3 KB
18ENV PGAP_VERSION=2022-02-10.build58720 B
19ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system0 B
20|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7255 B
21COPY file:aeb6727cb3ff81a24840e275d624d2d92025995375afe628c530fa6da984fb9b in /root 55.03 MB
22WORKDIR /root0 B
23COPY dir:7cc786fbe73a6c57056fedfd652ea570fb3cea88b184328c132fd8319b3e40d1 in /root/binaries 1.23 GB
24|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.755.03 MB
25WORKDIR /root/binaries0 B
26|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7880.34 MB
27|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.737.01 MB
28|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7264 B
29|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7323 B
30WORKDIR /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin0 B
31|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7133.43 MB
32WORKDIR /root0 B
33|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.72.28 KB
34ENV NCBI=/netopt/ncbi_tools640 B
35ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system0 B
36ENV PATH=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
37ENV NI_SERVICE_NAME_TAXONOMY=some bogus value0 B
38ENV NI_SERVICE_NAME_TAXONOMY3=some bogus value0 B
39COPY dir:0109b3eb8edb05e1e17763710bb3980178a7eff93d4efc98510189054dc62eeb in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin 111.19 MB
40COPY file:196badb475cb8d8d075c4d5c7f92fa6d88b73f4dfc241d5f46e6660815fa7726 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/ 321 B
41COPY multi:acb3a49a5c8a8e1a54aabbddd310c5330f27fe7b0c090ec8061ed04b37688ad2 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/bin/ 111.19 MB
42COPY multi:87b7f76e5f284fd032dc642e5d5c6c37847193bb0d921ad3f9e225dc92350835 in /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin/ 8.24 KB
43COPY multi:f8150279596baa1727b51d7a208165254e1726b7b8d05490f850c7be5892a419 in /lib64/ 6.24 MB
44COPY file:3969a3de030a1e912e8aa87e0f0577e99e8a49b63a53aaa467d5a0358cba7287 in /netopt/ncbi_tools64/.ncbirc 627 B
45|5 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/lib ncbi_crisper_version=1.02 trnascan_version=2.0.7130 B
46WORKDIR /home/gpipe0 B
47CMD ["/usr/bin/bash"]0 B
48USER root0 B
49COPY dir:0774fdf16d4ccbe804e67ac335d5b940df815c10160321054c0e1d524be50a66 in /pgap/pgap 36.58 MB
50WORKDIR /pgap0 B
51/bin/sh -c /opt/python-3.9/bin/python3.9 -m venv4.04 MB
52/bin/sh -c venv/bin/pip3 install -U1.36 MB
53/bin/sh -c venv/bin/pip3 install -U63.05 MB
54/bin/sh -c venv/bin/pip3 install -U4.62 KB
55ENV PATH=/pgap/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
56/bin/sh -c mkdir /pgap/input148 B
57CMD ["/bin/sh"]0 B
58ARG PGAPX_BUILD0 B
59ARG PGAPX_REFDATA_BUCKET0 B
60ARG RAPT_BUILD0 B
61ENV PYTHONUNBUFFERED=10 B
62ENV NCBI=/netopt/ncbi_tools640 B
63ENV PATH=/pgap/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2022-02-10.build5872/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/skesa:/usr/bin/vdb0 B
64ENV LD_LIBRARY_PATH=:/usr/lib/ngs:/usr/lib/vdb0 B
65COPY dir:08235dff79fccd5da5469d7dbbbb35a09e9d3d35c20ac319115a4114939937b8 in / 173.94 MB
66ENV PGAPX_BUILD=2022-02-10.build58720 B
67ENV RAPT_BUILD=rapt-373476380 B
68ENV PGAPX_REFDATA_BUCKET=ncbi-pgap-refdata0 B
69ENV TINI_VERSION=v0.19.00 B
70ADD 84b50f1acc38c999c313832de2ae4bbedb1f1fa3ab9c76209b6f0adee5230fd1 in /tini 9.24 KB
71/bin/sh -c chmod +x /tini9.24 KB
72ENTRYPOINT ["/tini" "--"]0 B
73CMD ["/app/execute"]0 B

Command

ADD file:b3ebbe8bd304723d43b7b44a6d990cd657b63d93d6a2a9293983a30bfc1dfa53 in /