Running the script
Just run the following script to generate the certificates:
docker run -it -v "$PWD"/letsencrypt/archive/:/etc/letsencrypt/archive -v "$PWD"/letsencrypt/logs/:/var/log/letsencrypt 2ndkauboy/letsencrypt letsencrypt-auto certonly --manual --agree-tos --manual-public-ip-logging-ok --email email@example.com -d example.com -d www.example.com
The challenge will pause and ask you to create a file with a random name in the
.well-known/acme-challenge/ of your web server. After doing so, resume the process by pressing ENTER.
You will than find the certificates in the sub folder
letsencrypt/archive/[DOMAIN] of your current working folder.