Public Repository

Last pushed: a month ago
Short Description
Docker container for YAMP (https://github.com/alesssia/YAMP)
Full Description

This Docker image, based on Alpine Linux 3.7, includes conda-based installation of all the pieces of software used by YAMP (Yet Another Metagenomic Pipeline), namely:

  • bbmap v37.10
  • fastqc v0.11.5
  • metaphlan2 v2.6.0
  • qiime v1.9.1
  • humann2 v0.9.9
  • AWS CLI
Docker Pull Command
Owner
alesssia