Public | Automated Build

Last pushed: 23 days ago
Short Description
Dockerized gatk based on anapsix/alpine-java image.
Full Description

Dockerized gatk

Usage:

Docker Pull Command:

docker pull alexcoppe/gatk

Example (run mutect2 on tumor-normal pair):

docker run -it --rm  -v $(pwd):/data alexcoppe/gatk -T MuTect2   -R /data/reference.fa -I:tumor /data/tumor.bam -I:normal /data/normal.bam -L /data/targets.interval_list.bed -o /data/output.vcf
Docker Pull Command
Owner
alexcoppe
Source Repository

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