A program for unsupervised binning of metagenomic contigs by using nucleotide composition,
coverage data in multiple samples and linkage data from paired end reads.
Warning! This software is to be considered under development. Functionality and the user interface may still change significantly from one version to another.
If you want to use this software, please stay up to date with the list of known issues:
If you use CONCOCT in your publication, please cite:
Johannes Alneberg, Brynjar Smári Bjarnason, Ino de Bruijn, Melanie Schirmer, Joshua Quick, Umer Z Ijaz, Leo Lahti, Nicholas J Loman, Anders F Andersson & Christopher Quince. 2014. Binning metagenomic contigs by coverage and composition. Nature Methods, doi: 10.1038/nmeth.3103
A comprehensive documentation for concoct is hosted on readthedocs.
If you are having issues, please let us know. We have a mailing list located at: firstname.lastname@example.org which you can also subscribe to here.