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Short Description
PySB is a framework for building mathematical models of biochemical systems as Python programs. This container provides PySB within an iPython Notebook environment.
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Python Systems Biology modeling framework

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based
mathematical models of biochemical systems. It works nicely with
scientific Python libraries such as NumPy, SciPy and SymPy for model
simulation and analysis.


PySB depends on the following:

For full instructions, see the Installation chapter of the manual at


The manual is available online at You can also
generate the documentation locally by installing Sphinx and running
the following commands::

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.

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