Alvearie NARs

This container includes the NiFi NARs used in the Alvearie Clinical Ingestion pattern⁠. The NARs include custom processors used in the Alvearie Clinical Ingestion pattern's NiFi server.

Those custom processors currently include the following functionality:

• HL7 to FHIR conversion
• Run text against the IBM Annotation for Clinical Data Service

Instructions

This container image is not meant to be deployed standalone, instead it is meant to be mounted on a shared volume with a NiFi container, such as the cetic/nifi⁠ container. By doing that the NARs will be installed on the resulting NiFi Server and will be available to users of that NiFi instance.

For an example of how to use this container see the Alvearie Clinical Ingestion pattern⁠ Helm chart.

Versions

• 0.0.1: Initial implementation includes the following Custom Processors: ACDProcessor, GenerateFHIRFromMimic
• 0.0.2: New Custom Processors: DeIdentify, FHIRTranslation
• 0.0.3: Fixed classpath issues breaking HL7ToFhirProcessor
• 0.0.4: Updated hl7v2-fhir-converter to version 1.0.5