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Last pushed: 2 years ago
Short Description
beast with practical demo for running under dmtcp
Full Description

This image has BEAST [1] and one of the practicals[2] provided by the BEAST project.

To use:

  • start the container
  • get a shell on the container using docker exec -it --user=beast <container id> (requires docker >= 1.8
  • the "run.sh" script in the beast user's home directory will start the exercise using DMTCP
  • you'll need to start another shell for checkpointing using dmtcp_command

This image is built off of the companion "dmtcp-base" image within this author's repositories. The base image contains the Beagle libraries as well as DMTCP[4]

[1] Drummond AJ, Suchard MA, Xie D & Rambaut A (2012)
Bayesian phylogenetics with BEAUti and the
BEAST 1.7 Molecular Biology And Evolution 29: 1969-1973 full text
http://beast.bio.ed.ac.uk/

[2] http://beast-mcmc.googlecode.com/files/Divergence%20Dating%20%28Primates%29%20v1.2a.zip

[3] general purpose library for evaluating the likelihood of sequence evolution on trees
https://github.com/beagle-dev/beagle-lib

[4] http://dmtcp.sourceforge.net/

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atombaby

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