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Last pushed: 3 months ago
Short Description
Ubuntu based. Ready to work with 4Cin
Full Description

4Cin (https://github.com/batxes/4Cin)

4Cin is a suite of scripts that lets you generate 3D models of the chromatin of your favourite locus, using 4C data as the only input. These 3D models are openned with UCSF Chimera. The pipeline creates Hi-C-like contact maps (or virtual Hi-C) of these 3D models and additional scripts are provided to analyze the region further.

Running 4Cin:

docker run -it batxes/4cin_ubuntu 4Cin.py

The list of programs you can run:

4Cin.py

data_manager.py

paint_model.py

prepare_data.py

calculate_boundaries.py

prepare_data.py

calculate_vhic_from_realdata.py

Mut_comp.py

Evo_comp.py

HiC_comp.py
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batxes