Public Repository

Last pushed: 2 years ago
Short Description
It's a software package for mapping DNA sequences against a large reference genome.
Full Description
  • Tool Version BWA: 0.712, Samtools: 1.2
  • Working with Dockerized BWA_MEM: Follow bellow steps to run BWA_MEM image from Docker Hub.

    1.      Pull BWA_MEM image from Docker Hub
          # sudo docker pull bd2kbdds/bwa
     2.    Build the image
          # sudo docker build -t bd2kbdds/bwa
     3.    Run the image
          # sudo docker run -i -t bd2kbdds/bwa
     4.    How to run BWA?
          # bwa mem path/to/ref.fa reads.fq > aln.sam
          # bwa mem -x pacbio path/to/ref.fa reads.fq > aln.sam
          # bwa mem -x ont2d path/to/ref.fa reads.fq > aln.sam

For details on the parameters of the BWAmem tool, look at:

Docker Pull Command