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Last pushed: 8 months ago
Short Description
Ubuntu image with fMRI tools preinstalled (AFNI, FSL, etc.)
Full Description

neuro_analysis

Dockerfile for building the neuro_analysis docker container

Contains a ready-to-analyze Ubuntu container with common neuroimaging tools, including:

  • FSL
  • AFNI
  • Freesurfer
  • R
  • Custom Python scripts

The script I use to launch commands is:

#!/bin/bash

sudo -E docker run -v ${PADRE_ROOT}:/padre -v `pwd`:/working -w /working -ti bgross27/neuro_analysis $*

padre is a Python fMRI data organization library I wrote: http://github.com/azraq27/padre

neural is a Python fMRI analysis library: http://github.com/azraq27/neural

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bgross27
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