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Last pushed: a month ago
Short Description
HiCBrowser
Full Description

HiCBrowser Docker Image

Docker container for easy deployment of the HiCBrowser.

Usage

You can download and run the container with the following command. Navigating to http://localhost will display
HiCBrowser with a test dataset that we have assembled for you.

docker run --rm -i -t -p 80:80 bgruening/hicbrowser

If you want to include your own data you need to put everything into one directory (e.g. /home/rosi/data/) and the main
configuration file needs to have the name browserConfig.ini. This folder needs to be mounted into the container with the
following command.

docker run --rm -i -t -p 80:80 -v /home/rosi/data/:/data/ bgruening/hicbrowser

Open a webbrowser and your own data can be visualised on http://localhost.

If you want to start the HiCExplorer under a proxy prefix you can pass the environment variable PROXY_PREFIX into the container and your website will be available on http://localhost/hicexplorer/.

docker run -p 80:80 -e PREXY_PREFIX=/hicexplorer -v /home/rosi/data/:/data/ bgruening/hicbrowser

This image can also be used as a Galaxy Interactive Environment in conjunction with HiCExplorer.

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Owner
bgruening
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