bio3d/bio3d-web repository overview

⁠About

This docker image contains all components needed to run the Bio3D-web PCA and NMA-apps.

⁠Usage

To run a temporary container with Shiny Server hosting Bio3D-web you currently need to expose a directory on the host to the container holding data files and set generous permissions:

Set up bio3d-web data directory export DATADIR=/home/user/shiny_data mkdir $DATADIR && cd $DATADIR && \ mkdir annofiles biounit_files pfamfiles raw_files split_files && \ chmod -R 777 $DATADIR

Expose the directory on the host to the container using -v <host_dir>:<container_dir>. The following command will expose $DATADIR on the host (defined above) to /net/shiny_data to the container, and /tmp/shiny_logs on the host for the Shiny app logs:

docker run --rm -p 3838:3838 \
   -v $DATADIR:/net/shiny_data \
   -v /tmp/shiny_logs:/var/log/shiny-server \
   bio3d/bio3d-web

In a real deployment scenario, you will probably want to run the container in detached mode (-d) and listening on the host's port 80 (-p 80:3838):

docker run -d -p 80:3838 \
   -v $DATADIR:/net/shiny_data \
   -v /tmp/shiny_logs:/var/log/shiny-server \
    bio3d/bio3d-web

⁠More

read more at https://hub.docker.com/r/rocker/shiny/⁠