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Last pushed: a year ago
Short Description
Virtuoso docker image to host chebi, drugbank and biosemantics linkset
Full Description

Chebi, drugbank and biosemantics linkset rdf docker

Docker image to create a virtuoso instance and options to load the chebi, drugbank and biosemantics linkset.

Create docker container

docker run --name YOUR_CONTAINER_NAME -p 8890:8890 -p 1111:1111 
-e DBA_PASSWORD=YOUR_PASSWORD -e SPARQL_UPDATE=true 
-d biosemantics/chebi-drugbank-rdf

To access the bash of the container

docker exec -it YOUR_CONTAINER_NAME bash

Use the bash command below to load the chebi, drugbank and biosemantics linkset rdf data dump into the triple store

sh /data/scripts/load_rdf.sh

Reference

Chebi [rdf-dump]: http://www.berkeleybop.org/ontologies/chebi.owl

Bio2rdf drugbank [rdf-dump]: http://download.bio2rdf.org/release/3/drugbank/

Docker Pull Command
Owner
biosemantics

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