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Last pushed: a year ago
Short Description
version v1.1.3
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FROM ubuntu:14.04

RUN apt-get update && apt-get install -y\
build-essential\
cmake\
wget\
git\
zlib1g-dev\
libncurses-dev\
libreadline-gplv2-dev libncursesw5-dev libssl-dev libsqlite3-dev tk-dev libgdbm-dev libc6-dev libbz2-dev

ADD . /home

WORKDIR /home

RUN wget http://python.org/ftp/python/2.7.5/Python-2.7.5.tgz
RUN tar -xvf Python-2.7.5.tgz

WORKDIR /home/Python-2.7.5

RUN ./configure
RUN make
RUN make install

RUN python /home/get-pip.py

RUN pip install pysam

ADD . /home

WORKDIR /home/samtools-1.2
RUN make
RUN make install

WORKDIR /home/Radia_v1.1.3/scripts

ENV HELP="USAGE: python radia.py patientId chromId -n normalDnaBamFilename.bam -t tumorDnaBamFilename.bam -f fasta.fa -o output -i nomedelfasta

CMD echo $HELP

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Owner
bmslab

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