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Last pushed: a year ago
Short Description
version v1.0.5.0
Full Description

#----------------------------------------------------------------------------------
SomaticSniper Dockerfile
Remember to put the dockerfile in the same directory of SomaticSniper
Versions: SomaticSniper:v1.0.5.0

#----------------------------------------------------------------------------------

FROM ubuntu:16.04

WORKDIR /home

RUN apt-get update && apt-get install -y\
build-essential\
cmake\
zlib1g-dev\
libncurses-dev\
git

ADD . /home

#----------------------------------------------------------------------------------

#Let's build SomaticSniper!

#----------------------------------------------------------------------------------

WORKDIR /home/somatic-sniper

RUN mkdir build

WORKDIR /home/somatic-sniper/build

RUN cmake /home/somatic-sniper/

RUN make deps

RUN make -j

RUN ln -s /home/somatic-sniper/build/bin/bam-somaticsniper /usr/local/bin

#----------------------------------------------------------------------------------

ENV HELP='usage: bam-somaticsniper [options] -f <ref.fasta> <tumor.bam> <normal.bam> <snp_output_file>'

CMD echo $HELP

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bmslab

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