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Last pushed: a year ago
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version v2.3.9
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#----------------------------------------------------------------------------------
Varscan2 Dockerfile
Remember to put the dockerfile in the same directory of Varscan
Versions: Varscan:v2.3.9

#----------------------------------------------------------------------------------

FROM java:7

WORKDIR /home

RUN apt-get update && apt-get install -y\
build-essential\
cmake\
zlib1g-dev\
libncurses-dev\
git

ADD . /home

#----------------------------------------------------------------------------------

#Let's build Varscan!

#----------------------------------------------------------------------------------

WORKDIR /home/Varscan

RUN ln -s /home/Varscan/VarScan.v2.3.9.jar /usr/local/bin

#----------------------------------------------------------------------------------

ENV HELP='USAGE: java -jar VarScan.v2.3.9.jar [COMMAND] [OPTIONS]'

CMD echo $HELP

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bmslab

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