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Last pushed: 3 years ago
Short Description
Run hmmsearch with parameters
Full Description


run hmmsearch in HMMER package with parameters(profileHMM and FASTA formatted database file).

example: docker run -it bonohu/debian-hmmsearch2 PF00081 \

contents of '' script in Dockerfile is as follows.


get hmm

wget -O hmm.hmm$1/hmm

get DB

wget -O db.fa.gz $2

run hmmsearch with parameters

hmmsearch hmm.hmm db.fa.gz

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