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Last pushed: 2 years ago
Short Description
Wicked fast RNA-seq quantitation using Salmon
Full Description

Salmon v0.6.0
Based on Salmon: http://combine-lab.github.io/salmon/
Uses binary SalmonBeta-0.6.0_DebianSqueeze_tcmalloc.tar.gz

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Dockerfile to build Salmon v0.6.0

Based on Salmon http://combine-lab.github.io/salmon/

Uses binary SalmonBeta-0.6.0_DebianSqueeze_tcmalloc.tar.gz

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FROM debian:latest

#File Author
MAINTAINER Brandi Davis-Dusenbery

######## BEGIN INSTALLATION #########

update and install wget

RUN apt-get -m update && apt-get install -y wget

download salmon binary

RUN wget https://github.com/COMBINE-lab/salmon/releases/download/v0.6.0/SalmonBeta-0.6.0_DebianSqueeze_tcmalloc.tar.gz

unpack

RUN tar -xzf SalmonBeta-0.6.0_DebianSqueeze_tcmalloc.tar.gz

remove zipped file

RUN rm SalmonBeta-0.6.0_DebianSqueeze_tcmalloc.tar.gz

move to /var

RUN mv SalmonBeta-0.6.0_DebianSqueeze_tcmalloc /var/salmon

######### END INSTALLATION ###########

Set default container command

ENTRYPOINT ["/var/salmon/bin/salmon"]

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Owner
brandi