Genome Analysis Toolkit

Developed by the Data Science and Data Engineering group at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

For more information about GATK, see https://software.broadinstitute.org/gatk⁠

License

The versions of GATK in this repository are produced by the Broad Institute and fully open source under a BSD (3-clause) license.

Older versions

For GATK docker images of version 3.x, see https://hub.docker.com/r/broadinstitute/gatk3/.

Types of images in this repository

• broadinstitute/gatk:gatkbase-1.2.3 is the base image used by the other GATK tagged images. We do not expect to make many changes.

• full releases will be tagged with version