Public Repository

Last pushed: 15 days ago
Short Description
Official release repository for GATK versions 4.x
Full Description

Genome Analysis Toolkit

Developed by the Data Science and Data Engineering group at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size.

For more information about GATK, see


The versions of GATK in this repository are produced by the Broad Institute and fully open source under a BSD (3-clause) license.

Older versions

For GATK docker images of version 3.x, see

Types of images in this repository

  • broadinstitute/gatk:gatkbase-1.2.3 is the base image used by the other GATK tagged images. We do not expect to make many changes.

  • full releases will be tagged with version

Docker Pull Command