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Last pushed: 2 days ago
Short Description
Preprocessing pipeline for ATAC and scATAC data
Full Description

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<img src="docs/content/media/logo.png" width="50%"/>

This package is maintained by Caleb Lareau in the
Buenrostro Lab. Source code is made freely available
and a packaged install version is provided through PyPi.


The proatac package implements our data processing and quality control pipeline bulk
single cell ATAC-Seq,
and droplet-based ATAC-Seq data.

Workflow Overview

A detailed description of the workflow including a description of various parameter
settings is discussed in depth in the proatac documentation.
Below is a brief overview of



Check out the proatac documentation for detailed
installation instructions, dependency configuration, and other


are always welcomed. The easiest way for us to have correspondence (if appropriate/interesting
for the public) is through raising a new issue
on the GitHub source. For private concerns, email Caleb.
proatac logo made freely with logomakr these
blue and red
color definitions.

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