Public Repository

Last pushed: 2 years ago
Short Description
qiime build for bioinformatics applications
Full Description

MGMIC qiime docker

Ubuntu 14.01
QIIME 1.9.1


bug fixed: QIIME 1.9.0 PyNAST default reference alignment

Installed Software


:V3 / :latest

  • fastx_toolkit_0.0.13
  • Xvfb

Qiime Build System information

Python version: 2.7.6 (default, Mar 22 2014, 22:59:56) [GCC 4.8.2]
Python executable: /usr/bin/python
QIIME library version: 1.9.0
QIIME script version: 1.9.0
qiime-default-reference version: 0.1.1
NumPy version: 1.9.1
SciPy version: 0.15.1
pandas version: 0.15.2
matplotlib version: 1.3.1
biom-format version: 2.1.3
h5py version: Not installed.
qcli version: 0.1.1
pyqi version: 0.3.2
scikit-bio version: 0.2.3
PyNAST version: 1.2.2
Emperor version: 0.9.51
burrito version: 0.9.0
burrito-fillings version: Installed.
sortmerna version: SortMeRNA version 2.0, 29/11/2014
sumaclust version: SUMACLUST Version 1.0.00
swarm version: Swarm 1.2.19 [Feb 15 2015 03:58:02]
gdata: Installed.

Docker Pull Command

Comments (2)
a year ago

Agree with previous commenter - this image seems to work very well, and it would be really useful to see the Dockerfile behind it.

2 years ago

This looks like a really useful image. Would it be possible for you to publish the Dockerfile used?