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FROM rocker/rstudio
MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" rocker-maintainers@eddelbuettel.com
# Some commands borrowed from Hadleyverse rocker
## Install some external dependencies.
RUN apt-get update \
&& apt-get install -y --no-install-recommends -t unstable \
default-jdk \
default-jre \
gdal-bin \
icedtea-netx \
libatlas-base-dev \
libcairo2-dev \
libgsl0-dev \
libgdal-dev \
libgeos-dev \
libgeos-c1v5 \
librdf0-dev \
libssl-dev \
libmysqlclient-dev \
libpq-dev \
libsqlite3-dev \
librsvg2-dev \
libv8-dev \
libxcb1-dev \
libxdmcp-dev \
libxml2-dev \
libxslt1-dev \
libxt-dev \
netcdf-bin \
qpdf \
r-cran-rgl \
ssh \
vim \
&& R CMD javareconf \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/ \
&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
## Install the Hadleyverse packages (and some close friends).
RUN install2.r --error \
devtools \
dplyr \
ggplot2 \
ggthemes \
knitr \
reshape2 \
readxl \
rmarkdown \
rmdformats \
tidyr \
shiny \
stringr \
xml2
## Manually install (useful packages from) the SUGGESTS list of the above packages.
## (because --deps TRUE can fail when packages are added/removed from CRAN)
RUN install2.r --error \
-r "https://cran.rstudio.com" \
-r "http://www.bioconductor.org/packages/release/bioc" \
base64enc \
BiocInstaller \
nlme \
Rcpp \
rJava \
RMySQL \
RPostgreSQL \
RSQLite \
testit \
V8 \
XML \
&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
ADD installRpkg.R /tmp
RUN R -f /tmp/installRpkg.R
## httr authentication uses this port
EXPOSE 1410
ENV HTTR_LOCALHOST 0.0.0.0
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