FROM rocker/rstudio
MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" rocker-maintainers@eddelbuettel.com

# Some commands borrowed from Hadleyverse rocker

## Install some external dependencies.
RUN apt-get update \
  && apt-get install -y --no-install-recommends -t unstable \
    default-jdk \
    default-jre \
    gdal-bin \
    icedtea-netx \
    libatlas-base-dev \
    libcairo2-dev \
    libgsl0-dev \
    libgdal-dev \
    libgeos-dev \
    libgeos-c1v5 \
    librdf0-dev \
    libssl-dev \
    libmysqlclient-dev \
    libpq-dev \
    libsqlite3-dev \
    librsvg2-dev \
    libv8-dev \
    libxcb1-dev \
    libxdmcp-dev \
    libxml2-dev \
    libxslt1-dev \
    libxt-dev \
    netcdf-bin \
    qpdf \
    r-cran-rgl \
    ssh \
    vim \
  && R CMD javareconf \
  && apt-get clean \
  && rm -rf /var/lib/apt/lists/ \
  && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

## Install the Hadleyverse packages (and some close friends).
RUN install2.r --error \
    devtools \
    dplyr \
    ggplot2 \
    ggthemes \
    knitr \
    reshape2 \
    readxl \
    rmarkdown \
    rmdformats \
    tidyr \
    shiny \
    stringr \
    xml2

## Manually install (useful packages from) the SUGGESTS list of the above packages.
## (because --deps TRUE can fail when packages are added/removed from CRAN)
RUN install2.r --error \
    -r "https://cran.rstudio.com" \
    -r "http://www.bioconductor.org/packages/release/bioc" \
    base64enc \
    BiocInstaller \
    nlme \
    Rcpp \
    rJava \
    RMySQL \
    RPostgreSQL \
    RSQLite \
    testit \
    V8 \
    XML \
  && rm -rf /tmp/downloaded_packages/ /tmp/*.rds

ADD installRpkg.R /tmp

RUN R -f /tmp/installRpkg.R

## httr authentication uses this port
EXPOSE 1410
ENV HTTR_LOCALHOST 0.0.0.0