Public | Automated Build

Last pushed: 2 years ago
Short Description
QIIME installation in a docker container along with the Jupyter Notebook server.
Full Description


Docker image for our Qiime pipeline.

Get it with

docker pull cdiener/qiime-docker

For a version that has the R kernel and DADA2 installed as well use

docker pull cdiener/qiime-docker:dada2

Than run with

docker run -p 8888:8888 cdiener/qiime-docker

and open you browser at http://localhost:8888.

For advanced usage the image also supports all jupyter minimal-notebook environment variables such as enabling HTTPS and
specifying a password. See here for more infos.

Docker Pull Command
Source Repository