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Last pushed: 3 years ago
Short Description
use R genetics tools and Bioconductor in Jupyter notebooks
Full Description


  • use R genetics tools for Jupyter Notebooks
  • also install base BioConductor packages
  • add in additional tools by appending to R-requirements.txt

Run a temporary notebook server on port 8888 of the host with notebooks served
from my home directory on the host

docker run -it --rm -p 8888:8888 \
  -v /Users/johnmccallum/:/HOME cfljam/pyrat_genetics \
  sh -c "ipython notebook --ip= \
  --port=8888 --no-browser --notebook-dir=/HOME"
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