Public | Automated Build

Last pushed: 5 months ago
Short Description
Anduril Moksiskaan database v2.05
Full Description

anduril-moksiskaan

Docker image for the Moksiskaan database built on top of anduril-base.

Installation

Via pre-built image

A pre-built docker image is available at Dockerhub and can be installed with:

docker pull cfrech/anduril-moksiskaan

The total size of the image is ~7 Gb, mostly due to the large anduril-base image.

Via Dockerfile

git clone https://github.com/Gig77/anduril-moksiskaan/
cd anduril-moksiskaan
docker build -t cfrech/anduril-moksiskaan .

The Dockerfile does not populate the Moksiskaan database from scratch but imports a database dump, which is distributed as part of this repository. If anduril-base is already available on the host, building the Dockerfile should not take longer than a few minutes.

After successful installation, the following command outputs two example gene names from the Moksiskaan database:

$ docker run --rm -u anduril cfrech/anduril-moksiskaan /opt/moksiskaan/db/piispanhiippa -Rs BioentityName -Rt 10,DNARegion AIP MUTYH

Configuration

  • Moksiskaan Version 2.05 (2014-07-22)
  • Anduril 1.2.23
  • Debian Wheezy (7.8)
  • Hibernate version 4.3.5.Final
  • Moksiskaan installation directory: /opt/moksiskaan
  • psql (PostgreSQL) 9.1.16

Additional features

  • Password-less login with user anduril (sudoer)
  • Entrypoint to automatically start the PostgreSQL daemon upon login

License

Moksiskaan code is available under the GNU General Public License. All rights to its logo has been released into the public domain.

Moksiskaan installation script populates (unless this option has been disabled) your database using KEGG Pathway and Drug database. Please follow their license agreement according to the use of the obtained data.

Some restrictions may apply to DrugBank import when used for commercial purposes. Please ask DrugBank authors for explicit permissions.

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Owner
cfrech
Source Repository