chmaramis/irprofiler repository overview

⁠About

IRProfiler Docker Image is a full-fledged Galaxy installation that integrates IRProfiler, a novel Galaxy toolbox for immunorepertoire profiling. The IRProfiler Docker Image relies on the Galaxy Docker Image (bgruening/galaxy-stable⁠).

This is made available as supplementary material for the article IRProfiler - A Software Toolbox for High Throughput Immune Receptor Profiling, authored by C. Maramis et al. and published in BMC Bioinformatics⁠.

⁠Usage

Start the IRProfiler Galaxy image as follows:

docker run -d -v <galaxy_storage>:/export -p 8080:80 -p 8021:21 -p 8022:22 chmaramis/irprofiler

where <galaxy_storage> is a local folder in which things such as the databases and tool sheds of the installation are going to be persistently stored.

The Galaxy instance will become accessible via `http://<hostname or IP>:8080 after executing the command above. For more usage options, you can visit bgruening/galaxy-stable⁠.

⁠Administration

The Galaxy instance comes with an administrator account for carrying out management tasks. Administrator credentials:

• username: admin
• password: admin