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Last pushed: 2 years ago
Short Description
metaBarcoding and Environmental DNA analyses tool - manual build
Full Description

metaBarcoding and Environmental DNA analyses tool

More details about the pipeline can be found on our Github page.

We build on the docker image for Reprophylo running Ubuntu 14.04.

CONTACT: chrisi.hahni@gmail.com

Start up the container by running, e.g. the following command:

sudo docker run -v ~/Dropbox/Github/Docker/test:/home/working -t -i chrishah/metabeat2 /bin/bash

or do the following to e.g. mount two directories. One contains the input data and will be mounted as write only. The second directory is mounted as output directory.

INDIR=/home/chrishah/Dropbox/Github/Docker/test/James/data/
OUTDIR=/home/chrishah/Dropbox/Github/Docker/test/James/output/
sudo docker run -v $INDIR:/home/working/IN/:ro -v $OUTDIR:/home/working/OUT/ -t -i chrishah/metabeat2 /bin/bash
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chrishah

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