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Last pushed: 2 years ago
Short Description
Base image to run cwl-runner. Based on ubuntu:14.04.
Full Description

Exploring the Common Workflow Language (CWL)

CWL websites:

Example CWL workflows from the CWL developers here.

Refernce implementation of CWL on Github here

Dockerfile to build a self containing Docker images to run cwl-runner can be found here.

Image is on Docker hub here.

To enter the container:

sudo docker run --privileged --rm -it -v $(pwd):/home chrishah/testing_cwl:v1.0.0 /bin/bash

To run as an executable:

sudo docker run --privileged --rm -it -v $(pwd):/home chrishah/testing_cwl:v1.0.0 cwl-runner

My own personal test workflows are here.

Try to execute a very simple workflow:

cd testing/hello-new/
sudo docker run --privileged --rm -it -v $(pwd):/home chrishah/testing_cwl:v1.0.0 cwl-runner hello-new.cwl
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chrishah
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