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Last pushed: 3 months ago
Short Description
FAST Genomics wrapper for the SCnorm R-package
Full Description

fg_scnorm

This docker container is a wrapper around the SCnorm R-package (https://github.com/rhondabacher/SCnorm) to use the algorithm in the FAST Genomics pipeline.

Analysis Configuration

Analysis parameters for SCnorm can be adusted by making changes to the ./config/SCnorm_config.yml file.

Data Input/Output

The input file directory needs to be mounted as /fastgenomics/input, the output file directory needs to be mounted as /fastgenomics/output.

Running App

docker run -v /path/to/input/files:/fastgenomics/input -v /path/to/output/files:/fastgenomics/output -i fastgenomics/fg_scnorm

Authors

  • cjscholz
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cjscholz
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