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Last pushed: 2 years ago
Short Description
Mapsembler2 - targeted assembly software - Colib'read tool
Full Description

###Mapsembler2 description:

Mapsembler2 is a targeted assembly software. It takes as input any number of NGS raw read set(s) (fasta or fastq, gzipped or not) and a set of input sequences (starters). For each starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice. Mapsembler2 may be used for (not limited to):

· Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. Checks if a known enzyme is present in a metagenomic NGS read set.

· Enrich unmappable reads by extending them, possibly making them mappable · Checks what happens at the extremities of a contig.

· Check the presence / absence and quantify RNA seq splicing events. Check the presence/absence of SNPs or structural variants, …

###Mapsembler2 website:
https://colibread.inria.fr/software/mapsembler2/

###Mapsembler2 Docker Github:
https://github.com/cmonjeau/docker-mapsembler2

###Run Mapsembler2 with docker:
docker run -it --rm cmonjeau/mapsembler2

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Owner
cmonjeau