Public Repository

Last pushed: 2 years ago
Short Description
BioInterchange makes genomic data scaling and data integration easy.
Full Description

Genomic data comes in files, which is pretty awesome, if you are a file system! For data scientists or bioinformaticians it is an unnecessary hurdle to get to the juicy data though.

BioInterchange gets you to the data straightaway:

  • one easy-to-read data model to multiple genomics standards (GFF3, GVF, VCF)
  • high-performance data access via Python API that outperforms BioPython and BioRuby
  • data integration into RethinkDB, MongoDB, PostgreSQL, Elasticseach, etc., via JSON
  • more data integration into RDF triple stores via JSON-LD
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Owner
codamono