What's in the base image??
A bunch of NGS Powertools!
Why not separate containers per application?
A more natural / more docker-esque approach might simply be to have separate containers for each application.
This idealism belies the fact that we already need many of these tools installed on the same container
as they regularly interact in a deep way. So these should really be thought of and built as a single development environment.
I notice that running
vcf-validator produces this error:
Can't locate Vcf.pm in @INC (you may need to install the Vcf module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.20.2 /usr/local/share/perl/5.20.2 /usr/lib/x86_64-linux-gnu/perl5/5.20 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.20 /usr/share/perl/5.20 /usr/local/lib/site_perl .) at /usr/local/bin/vcf-validator line 9.
BEGIN failed--compilation aborted at /usr/local/bin/vcf-validator line 9.
I think some components of vcftools might not be installed correctly.
Hi, which image is the most current/stable release?
docker pull compbio/ngseasy-base returns:
Using default tag: latest
Pulling repository docker.io/compbio/ngseasy-base
Tag latest not found in repository docker.io/compbio/ngseasy-base