Public Repository

Last pushed: 2 years ago
Short Description
NGS Tool Box: big-kahuna
Full Description

What's in the box?

Aligners

aligners: bwa, snap, mrsfast, bowtie2, novoalign, stampy
Aligners
bwa
snap
mrsfast
bowtie2
novoalign
stampy

Basic Variant Callers

varcallers: freebayes, platypus, VarDict, VarScan, samtools,gatk-hc
Variant Callers
freebayes
platypus
VarDict
VarScan
samtools
gatk-hc

Structural Variant Callers

svcallers: lumpy,lumpyexpress,svtyper, cnvkit
Structural Variant Callers
lumpy
lumpyexpress
svtyper
cnvkit

Re-Aligners

realn: abra.jar, glia, ogap
Re-Aligners
abra
glia
ogap
Docker Pull Command
Owner
compbio