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Short Description
SURPI: pathogen identification from complex metagenomic NGS data generated from clinical samples.
Full Description

SURPI is a computational pipeline for pathogen identification from complex metagenomic next-generation sequencing (NGS) data generated from clinical samples.

Unbiased NGS approaches enable comprehensive pathogen detection in the clinical microbiology laboratory, and have numerous applications for public health surveillance, outbreak investigation, and the diagnosis of infectious diseases. However, practical deployment of the technology has been hindered by the bioinformatics challenge of analyzing results accurately and in a clinically relevant timeframe.

Check out: http://chiulab.ucsf.edu/surpi/

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compbio

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