Public | Automated Build

Last pushed: a year ago
Short Description
Ribosomal Database Project (RDP) Classifier.
Full Description

RDP classifier - Docker

Ribosomal Database Project (RDP) Classifier in a Docker image.

RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools to the scientific community.

Available Tags/Versions

  • latest: GitHub snapshot (master)
  • 2.12: RDP Classifier Release 2.12
  • 2.11: RDP Classifier Release 2.11

Quickstart

  1. Download the latest version:

    docker pull compmetagen/rdpclassifier

  2. Run an instance of the image, mounting the host directory:

    docker run -t -i -v /Users/davide/rdp:/rdp -w /rdp compmetagen/rdpclassifier /bin/bash

  3. Check the RDP Classifier version:

    root@44b2c8de4e4e:/rdp# echo $RDP_VERSION

  4. Run the RDP Classifier:

    root@44b2c8de4e4e:/rdp# java -Xmx2g -jar $RDPPATH/dist/classifier.jar classify input.fna -o output.txt

Docker Pull Command
Owner
compmetagen