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Last pushed: a year ago
Short Description
provides a R reference class for bibliospec generated files
Full Description

bibliospec - provides a reference class for bibliospec files

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Convert mascot .dat or comet .pep.xml files with BibliopSpec into
.sqlite files. Access the data with the CRAN package bibliospec to analyse it with specL, protViz or prozor in R.

install the R package

install.packages('bibliospec')

generate a bibliospec file

file from a mascot result file using the linux command line

~/bin/BiblioSpec/BlibBuild \
/usr/local/mascot/data/20160615/F237635.dat \
F237635.blib

Note: BlibBuild is contained in proteowizard and link it to the msparser libraries.

references

UNIT 13.7 Using BiblioSpec for Creating and Searching Tandem MS,
Peptide Libraries. Barbara Frewen, Michael J. MacCoss.
Current Protocols in Bioinformatics Current Protocols in Bioinformatics.
DOI: 10.1002/0471250953.bi1307s20.

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cpanse
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