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Last pushed: 2 months ago
Short Description
Open-Source Dependencies for HPV Typing and Ethnicity Assignments
Full Description

Everything in cwarden45/genomics-base plus:

biopython (v1.67)
cutadapt (v1.13, set in $PATH as cutadapt)
PEAR (v0.9.10, opt/pear-0.9.10-bin-64/pear-0.9.10-bin-64)
plink (v1.9, set in $PATH as plink)
ADMIXTURE (v1.3.0, set in $PATH as admixture)
nano (v2.5.3-2)
reshape R package (v0.8.6)
png R package (v.0.1-7)
limma R package (v.3.30.13)
edgeR R package (v3.16.5)
gplots R package (v3.0.1)
heatmap.3.R (code downloaded as /opt/heatmap.3.R, downloaded from https://github.com/obigriffith/biostar-tutorials/blob/master/Heatmaps/heatmap.3.R on 6/21/2017)

R packages installed in /usr/local/lib/R/site-library

Docker Pull Command
Owner
cwarden45

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