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Last pushed: 10 months ago
Short Description
Commonly Used Bioinformatics Programs for Illumina RNA-Seq Analysis
Full Description

Includes programs from cwarden45/genomics-base as well as:

cmake (v3.5.1)
pip (v8.1.1)
cython (v0.24)
pysam (v0.9.1.2)
biopython (v1.68)
RSeQC (v2.6.4, python functions set in $PATH)
QoRTs (v1.1.8, /opt/QoRTs/QoRTs_1.1.6/QoRTs.jar)
Bowtie2 (v2.2.9, set in $PATH)
Tophat2 (v2.1.1, set in $PATH)
HT-Seq (v0.6.0., htseq-count in $PATH)
STAR (v2.5, binaries for STAR and STARlong in /opt/STAR/bin/Linux_x86_64 or /opt/STAR/bin/Linux_x86_64_static)
RSEM (v1.2.31, in /opt/RSEM)
Salmon (v0.6.0, in /opt/salmon/bin/salmon)

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cwarden45

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