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Last pushed: 2 months ago
Short Description
Delly: Structural variant discovery by integrated paired-end and split-read analysis.
Full Description

Dockerized DELLY

Delly is available as a Docker image. You can pull the DELLY image using

docker pull dellytools/delly

You can then run DELLY from that image. Below we assume your bam files are in /var/data which is mounted as /data in the docker container:

docker run -it -v /var/data:/data dellytools/delly /bin/bash

delly call -t DEL -o /data/del.bcf -g /data/ref.fa /data/s1.bam /data/s2.bam

Once DELLY is finished you can just exit the Docker image:

exit

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dellytools
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