Public | Automated Build

Last pushed: 2 months ago
Short Description
Docker image packaging of perl and golang to export data for migration
Full Description

Migration data export

This is a source repository for docker image to run
all data export tasks of dictybase overhaul project.

Usage

Build

docker build --rm=true -t dictybase/migration-data-export .

Run

Command line

```
docker run --rm dictybase/migration-data-export app -h

NAME:
Command line wrapper to export data from Oracle chado using modware-loader - A new cli application

USAGE:
Command line wrapper to export data from Oracle chado using modware-loader [global options] command [command options] [arguments...]

VERSION:
1.0.0

COMMANDS:
canonicalgff3 Export the canonical gff3 of all the dictyostelids
extradictygff3 Export the additional gff3 of all the D.discoideum
geneannotation Export annotations associated with gene models
stockcenter Export strains, plasmids and all assoicated annotations related to stock center
literature Export the literature and annotations
help, h Shows a list of commands or help for one command

GLOBAL OPTIONS:
--help, -h show help
--version, -v print the version

Docker Pull Command
Owner
dictybase

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