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Last pushed: a month ago
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Automate docker
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Galaxy_ChIP-Seq

This repo contains a .yml file and a Dockerfile.

  • .yml: This file have all the required tools, which would be downloaded from Galaxy Project
  • Dockerfile: This docker file will install the ChIP-Seq flavoured galaxy on your computer.

Tools included for data analysis:

  1. FASTQC : to check the quality of fastq file.
  2. Trimmomatic : to trip the adaptors and also to remove reads wit hlow quality.
  3. bowtie2 : to align the samples to reference genome.
  4. samtools : to convert sam files to bam format and also to sort & index bam files.
  5. Picard tools : to mark the duplicated reads.
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dktanwar
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