This repo contains a
.yml file and a
.yml: This file have all the required tools, which would be downloaded from Galaxy Project
Dockerfile: This docker file will install the
ChIP-Seqflavoured galaxy on your computer.
Tools included for data analysis:
FASTQC: to check the quality of
Trimmomatic: to trip the adaptors and also to remove reads wit hlow quality.
bowtie2: to align the samples to reference genome.
samtools: to convert
bamformat and also to sort & index
Picard tools: to mark the duplicated reads.
Docker Pull Command