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#sequencing_utilities

scripts for processing next generation sequencing data

##Douglas McCloskey

##Credits:

Ali Ebrahim for writing the original sequtil library from which this is derived

To install, please follow the instructions.

###Project Goals:

  1. Compilation of all open-source next generation sequencing packages in a single docker image for fast and pain-free deployment

  2. Methods to run analyses on large batches of samples utilizing docker containers

  3. Methods for distributing data across storage servers and compute servers utilizing docker containers

###TODO:

add/update .py main to include all function parameters

modify shell scripts to call .py main

add docker_run scripts to run breseq using Docker

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