gastro-docker: Analyze 13C Breath Test and MRI gastric emptying
Author: Dieter Menne, Menne Biomed Consulting, Tübingen in cooperation with University Hospital of Zürich
gastro-docker container allows you to compute fits to gastric emptying time series, or to 13C time series from a web interface without installation hassles if your institution allows you to install Docker.
On Docker Hub:
On Docker Cloud to check build details:
- Analyze Gastric Emptying time series from MRI or from scintigraphy using package gastempt.
- 13C breath test data for gastric emptying using packages breathtestshiny, breathtestcore and breathteststan. Fitting works already for single curves and for studies, tabular reporting is available.
- We welcome your feedback on report formats and your experience with not-so-well-behaved time series, especially those with multiple peaks.
How to run
- Install Docker. For Windows, you can get the installer from the Docker store.
- Linux users know how to install Docker anyway.
- Docker works best on Windows 10 Professsional where it can be run as a native application; on earlier Windows 64-bit versions, it requires the Oracle Virtual Box which is automatically installed. For installation details, see here.
- Docker should have at least 2 GB of memory; on Windows, use Settings from the Docker tray icon. If you want to compile Docker yourself, at least 4 GB are required; expect strange error messages if you do not provide sufficient RAM.
- From the command line, enter the following:
docker run --name gastro-docker -p 8787:8787 -p 3838:3838 -d dmenne/gastro-docker