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A docker image for extracting Gene Ontology terms from a CSV file
The Docker image built by the Dockerfile is designed to be used by docker-pipeline.
The image's default command is an executable python script, extract_go_terms.py, which replaces parsing and matching in go_sequence.py from YoderLab/MMAP. It produces a CSV file containing unique GO terms and the number of times they occurred in the input file
| Variable | Description | Type | Required? | Default |
|---|---|---|---|---|
| CONT_INPUT_BLAST_RESULTS_FILE | CSV file in BLAST CSV format with subject titles containing [GO:xxxxxx] terms | Input | Yes | |
| CONT_OUTPUT_GOTERMS_FILE | Results file, in CSV format. GO terms and counts | Output | Yes |
docker pull dukegcb/extract-go-terms